Variant report

Variant	rs60752568
Chromosome Location	chr5:154519327-154519328
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs58103748	1.00[AMR][1000 genomes]
rs58868193	1.00[AMR][1000 genomes]
rs73282128	1.00[AMR][1000 genomes]
rs73808742	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883059	chr5:154457905-154556230	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv462492	chr5:154489393-154523910	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv600091	chr5:154489393-154523910	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154519000-154519400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr5:154519000-154519400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:154519000-154519400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr5:154519000-154519400	Enhancers	Brain Anterior Caudate	brain
5	chr5:154519000-154519400	Enhancers	Fetal Heart	heart
6	chr5:154519000-154519400	Active TSS	Osteobl	bone
7	chr5:154519000-154519800	Enhancers	Right Ventricle	heart
8	chr5:154519200-154519400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr5:154519200-154519400	Active TSS	Brain Inferior Temporal Lobe	brain
10	chr5:154519200-154519400	Enhancers	Brain Substantia Nigra	brain
11	chr5:154519200-154519400	Enhancers	Fetal Stomach	stomach
12	chr5:154519200-154519400	Flanking Active TSS	Stomach Smooth Muscle	stomach
13	chr5:154519200-154519600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
14	chr5:154519200-154519800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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