Variant report

Variant	rs60757058
Chromosome Location	chr7:47681343-47681344
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:47679338..47681929-chr7:47689941..47692555,2	MCF-7	breast:
2	chr7:47681304..47684900-chr7:47685639..47688597,3	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs57761869	0.88[ASN][1000 genomes]
rs59453710	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59784815	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73697714	0.90[ASN][1000 genomes]
rs73697717	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026223	chr7:47560728-48243287	Genic enhancers Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:47675000-47681600	Enhancers	Fetal Stomach	stomach
2	chr7:47676000-47686600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:47676400-47681800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr7:47676800-47681800	Enhancers	A549	lung
5	chr7:47676800-47686800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr7:47677000-47687000	Weak transcription	NHLF	lung
7	chr7:47677800-47681400	Enhancers	Fetal Muscle Leg	muscle
8	chr7:47678200-47681600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr7:47678600-47681600	Enhancers	NH-A	brain
10	chr7:47678600-47687000	Weak transcription	Spleen	Spleen
11	chr7:47679000-47681800	Weak transcription	Gastric	stomach
12	chr7:47679000-47681800	Enhancers	HepG2	liver
13	chr7:47679400-47681800	Enhancers	Osteobl	bone
14	chr7:47679600-47681400	Enhancers	Fetal Muscle Trunk	muscle
15	chr7:47679600-47681600	Enhancers	HSMMtube	muscle
16	chr7:47679800-47681400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr7:47679800-47681400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr7:47679800-47681600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr7:47680800-47684600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr7:47680800-47684600	Weak transcription	Stomach Smooth Muscle	stomach
21	chr7:47680800-47686400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr7:47680800-47686600	Weak transcription	Fetal Heart	heart
23	chr7:47681200-47686600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links