Variant report

Variant	rs57761869
Chromosome Location	chr7:47685787-47685788
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs56826338	1.00[EUR][1000 genomes]
rs59453710	0.90[ASN][1000 genomes]
rs60757058	0.88[ASN][1000 genomes]
rs73697714	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73697717	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73697722	1.00[EUR][1000 genomes]
rs73697726	1.00[EUR][1000 genomes]
rs7780029	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026223	chr7:47560728-48243287	Genic enhancers Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:47676000-47686600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:47676800-47686800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:47677000-47687000	Weak transcription	NHLF	lung
4	chr7:47678600-47687000	Weak transcription	Spleen	Spleen
5	chr7:47680800-47686400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr7:47680800-47686600	Weak transcription	Fetal Heart	heart
7	chr7:47681200-47686600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr7:47681400-47686600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:47681600-47686600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr7:47681800-47686200	Weak transcription	A549	lung
11	chr7:47681800-47687200	Weak transcription	Osteobl	bone
12	chr7:47685000-47686800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr7:47685600-47686800	Enhancers	HepG2	liver
14	chr7:47685600-47688200	Enhancers	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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