Variant report

Variant	rs73697722
Chromosome Location	chr7:47694409-47694410
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EGR1	chr7:47694223-47694672	ECC-1	luminal epithelium:	n/a	chr7:47694442-47694452
2	FOSL2	chr7:47693316-47694464	A549	lung:	n/a	n/a
3	RPC155	chr7:47693546-47694439	Hela-S3	cervix:	n/a	n/a
4	RCOR1	chr7:47693272-47694660	IMR90	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:47691927..47694720-chr7:47708904..47710828,2	MCF-7	breast:

Variant related genes	Relation type
C7orf65	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs56826338	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57761869	1.00[EUR][1000 genomes]
rs6463446	1.00[AMR][1000 genomes]
rs73697714	1.00[EUR][1000 genomes]
rs73697717	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73697726	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7780840	1.00[AMR][1000 genomes]
rs7802727	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026223	chr7:47560728-48243287	Genic enhancers Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv888003	chr7:47694270-47907214	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:47687200-47695000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr7:47689800-47694800	Enhancers	NH-A	brain
3	chr7:47690000-47695000	Enhancers	NHDF-Ad	bronchial
4	chr7:47690400-47694800	Enhancers	NHLF	lung
5	chr7:47690600-47695600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr7:47692200-47694600	Enhancers	HSMMtube	muscle
7	chr7:47692600-47694800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr7:47693000-47694600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr7:47693000-47694800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:47693200-47694800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr7:47693200-47695000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr7:47693200-47695000	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr7:47693200-47695200	Enhancers	Fetal Muscle Leg	muscle
14	chr7:47693200-47695400	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr7:47693200-47695400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr7:47693200-47695400	Enhancers	Placenta	Placenta
17	chr7:47693400-47694600	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr7:47693400-47694800	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr7:47693400-47694800	Enhancers	Fetal Muscle Trunk	muscle
20	chr7:47693400-47694800	Enhancers	HMEC	breast
21	chr7:47693400-47695000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr7:47693400-47695000	Enhancers	HSMM	muscle
23	chr7:47693400-47695400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr7:47693600-47694600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr7:47693600-47695000	Enhancers	H1 Cell Line	embryonic stem cell
26	chr7:47693600-47695000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr7:47693600-47695200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr7:47693800-47694600	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr7:47693800-47694600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr7:47693800-47694600	Enhancers	Hela-S3	cervix
31	chr7:47693800-47695200	Enhancers	Muscle Satellite Cultured Cells	--
32	chr7:47693800-47695400	Enhancers	A549	lung
33	chr7:47693800-47697800	Weak transcription	HepG2	liver
34	chr7:47694000-47694800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr7:47694200-47694600	Enhancers	iPS-20b Cell Line	embryonic stem cell
36	chr7:47694200-47694600	Weak transcription	Spleen	Spleen
37	chr7:47694200-47694800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr7:47694200-47694800	Enhancers	Cortex derived primary cultured neurospheres	brain
39	chr7:47694200-47694800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr7:47694200-47694800	Enhancers	Brain Germinal Matrix	brain
41	chr7:47694200-47694800	Weak transcription	Lung	lung
42	chr7:47694400-47695200	Enhancers	Osteobl	bone
43	chr7:47694400-47695400	Enhancers	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links