Variant report

Variant	rs6076012
Chromosome Location	chr20:23013540-23013541
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10485639	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13036275	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1331071	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1883956	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2207106	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2207107	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2268197	0.82[AFR][1000 genomes]
rs2268199	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34217171	0.82[EUR][1000 genomes]
rs34854430	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34980833	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35745073	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36016048	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3746726	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3746728	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6076008	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6076010	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6076013	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6082974	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6082975	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6082977	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6082986	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6106596	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6113905	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6113908	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6515299	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7262749	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8120756	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv524981	chr20:23011468-23021597	Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23001000-23015800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr20:23011200-23013800	Enhancers	Left Ventricle	heart
3	chr20:23011400-23014600	Enhancers	Dnd41	blood
4	chr20:23012000-23014800	Enhancers	Right Ventricle	heart
5	chr20:23012200-23014000	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr20:23012600-23014600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr20:23012800-23014000	Enhancers	Primary hematopoietic stem cells	blood
8	chr20:23012800-23014400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr20:23013000-23013800	Enhancers	Fetal Muscle Trunk	muscle
10	chr20:23013000-23013800	Enhancers	Fetal Thymus	thymus
11	chr20:23013000-23014200	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr20:23013000-23014200	Enhancers	Fetal Stomach	stomach
13	chr20:23013200-23014000	Enhancers	Fetal Muscle Leg	muscle
14	chr20:23013200-23014000	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
15	chr20:23013200-23016200	Weak transcription	Lung	lung
16	chr20:23013200-23017400	Enhancers	Fetal Heart	heart
17	chr20:23013400-23013800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
18	chr20:23013400-23014000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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