Variant report

Variant	rs6082974
Chromosome Location	chr20:22995361-22995362
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:22991807..22995756-chr20:23027897..23031739,4	MCF-7	breast:
2	chr20:22983134..22985232-chr20:22993817..22995557,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178726	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10485639	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13036275	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13042418	0.86[EUR][1000 genomes]
rs1331071	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1883956	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2207106	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2207107	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2268199	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34112928	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs34217171	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34854430	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34980833	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35745073	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36016048	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3746726	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3746728	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6076008	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6076010	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6076012	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6076013	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6082975	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6082977	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6082986	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6106596	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6113905	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6113908	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6515299	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7262749	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8120756	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8125104	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs874585	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22988400-22995600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr20:22991000-22995600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr20:22991000-22995600	Weak transcription	Dnd41	blood
4	chr20:22991200-23002200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr20:22994400-22999000	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr20:22994600-22997400	Weak transcription	A549	lung
7	chr20:22994600-22998800	Weak transcription	Skeletal Muscle Male	skeletal muscle

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