Variant report

No.	Distal block	Cell Line	Cell type
1	chr20:22991807..22995756-chr20:23027897..23031739,4	MCF-7	breast:
2	chr20:22902861..22905382-chr20:22990891..22992574,2	MCF-7	breast:
3	chr20:22986137..22988546-chr20:22990911..22992572,2	K562	blood:

Variant related genes	Relation type
ENSG00000178726	Chromatin interaction

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10485639	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13036275	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13042418	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1331071	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1883956	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2207106	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs2207107	0.83[EUR][1000 genomes]
rs34112928	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34217171	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34854430	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34980833	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35745073	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs36016048	0.83[EUR][1000 genomes]
rs3746726	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs3746728	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs6076008	0.85[EUR][1000 genomes]
rs6076009	0.81[CEU][hapmap]
rs6076013	0.83[EUR][1000 genomes]
rs6082974	0.91[EUR][1000 genomes]
rs6082975	0.92[CEU][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6082977	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6082986	0.81[EUR][1000 genomes]
rs6106596	0.83[EUR][1000 genomes]
rs6113905	0.82[EUR][1000 genomes]
rs6113908	0.83[EUR][1000 genomes]
rs8125104	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22988400-22993400	Weak transcription	Aorta	Aorta
2	chr20:22988400-22995600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr20:22990200-22992400	Enhancers	Placenta Amnion	Placenta Amnion
4	chr20:22990800-22993200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr20:22990800-22994000	Weak transcription	HSMM	muscle
6	chr20:22990800-22994000	Weak transcription	NHEK	skin
7	chr20:22991000-22993200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr20:22991000-22993400	Weak transcription	Right Ventricle	heart
9	chr20:22991000-22994000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr20:22991000-22994000	Weak transcription	HSMMtube	muscle
11	chr20:22991000-22995600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr20:22991000-22995600	Weak transcription	Dnd41	blood
13	chr20:22991200-22993000	Weak transcription	A549	lung
14	chr20:22991200-22993600	Weak transcription	Lung	lung
15	chr20:22991200-22994000	Weak transcription	HMEC	breast
16	chr20:22991200-23002200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr20:22991600-22992400	Enhancers	K562	blood
18	chr20:22992000-22993600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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