Variant report

Variant	rs6076051
Chromosome Location	chr20:23306826-23306827
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11905535	0.86[CHB][hapmap];0.88[CHD][hapmap]
rs7270669	0.86[CHB][hapmap];0.88[CHD][hapmap]
rs7270895	0.86[CHB][hapmap];0.88[CHD][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs6076051	SNX7	trans	lymphoblastoid	seeQTL
rs6076051	CXCL2	trans	brain	seeQTL
rs6076051	CSF3	trans	brain	seeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23302400-23309200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:23306000-23307000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr20:23306600-23307000	Enhancers	Adipose Nuclei	Adipose
4	chr20:23306800-23307600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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