Variant report

Variant	rs7270669
Chromosome Location	chr20:23280275-23280276
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:23279560..23282170-chr20:23340908..23343585,2	K562	blood:

Variant related genes	Relation type
ENSG00000125812	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11905535	0.88[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.89[MKK][hapmap];0.83[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11906751	1.00[AMR][1000 genomes]
rs11907155	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2405228	1.00[ASN][1000 genomes]
rs35419581	1.00[AMR][1000 genomes]
rs56752409	1.00[ASN][1000 genomes]
rs56848262	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57270728	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57666968	1.00[ASN][1000 genomes]
rs58071233	1.00[ASN][1000 genomes]
rs58496407	1.00[ASN][1000 genomes]
rs58950746	1.00[ASN][1000 genomes]
rs59146474	1.00[ASN][1000 genomes]
rs59371748	1.00[ASN][1000 genomes]
rs59775607	1.00[ASN][1000 genomes]
rs6036373	1.00[ASN][1000 genomes]
rs6048686	0.98[ASN][1000 genomes]
rs6076051	0.86[CHB][hapmap];0.88[CHD][hapmap]
rs60763856	1.00[ASN][1000 genomes]
rs61259462	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61322006	1.00[ASN][1000 genomes]
rs61594626	1.00[ASN][1000 genomes]
rs7264784	1.00[ASN][1000 genomes]
rs7267816	1.00[ASN][1000 genomes]
rs7269309	1.00[ASN][1000 genomes]
rs7270895	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7270957	0.86[YRI][hapmap];1.00[ASN][1000 genomes]
rs73316999	1.00[ASN][1000 genomes]
rs73319039	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73319041	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73904242	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv458948	chr20:23234699-23292849	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv585721	chr20:23234699-23292849	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23275600-23285200	Weak transcription	Spleen	Spleen
2	chr20:23275800-23281800	Weak transcription	Right Atrium	heart
3	chr20:23277000-23280400	Enhancers	NHDF-Ad	bronchial
4	chr20:23279800-23284000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr20:23280000-23280600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr20:23280000-23291000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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