Variant report

Variant	rs58071233
Chromosome Location	chr20:23295117-23295118
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:23293678..23296514-chr20:23337628..23339942,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000232645	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11905535	1.00[ASN][1000 genomes]
rs11907155	1.00[ASN][1000 genomes]
rs2405228	1.00[ASN][1000 genomes]
rs56752409	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56848262	1.00[ASN][1000 genomes]
rs57270728	1.00[ASN][1000 genomes]
rs57666968	1.00[ASN][1000 genomes]
rs58496407	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58950746	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59146474	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59371748	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59775607	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6036373	1.00[ASN][1000 genomes]
rs6048686	0.98[ASN][1000 genomes]
rs60763856	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61259462	1.00[ASN][1000 genomes]
rs61322006	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61594626	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7264784	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7267816	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7269309	1.00[ASN][1000 genomes]
rs7270669	1.00[ASN][1000 genomes]
rs7270895	1.00[ASN][1000 genomes]
rs7270957	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73316999	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73319039	1.00[ASN][1000 genomes]
rs73319041	1.00[ASN][1000 genomes]
rs73904242	1.00[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23285600-23301200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:23293000-23301000	Weak transcription	Gastric	stomach
3	chr20:23294200-23295200	Weak transcription	Adipose Nuclei	Adipose
4	chr20:23294200-23296200	Weak transcription	Right Atrium	heart
5	chr20:23294800-23295400	Enhancers	Stomach Smooth Muscle	stomach
6	chr20:23294800-23296400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr20:23295000-23296800	Enhancers	Skeletal Muscle Male	skeletal muscle

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