Variant report

Variant	rs6048686
Chromosome Location	chr20:23272900-23272901
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11905535	0.98[ASN][1000 genomes]
rs11907155	0.98[ASN][1000 genomes]
rs2405228	0.98[ASN][1000 genomes]
rs56752409	0.98[ASN][1000 genomes]
rs56848262	0.98[ASN][1000 genomes]
rs57270728	0.98[ASN][1000 genomes]
rs57666968	0.98[ASN][1000 genomes]
rs58071233	0.98[ASN][1000 genomes]
rs58496407	0.98[ASN][1000 genomes]
rs58950746	0.98[ASN][1000 genomes]
rs59146474	0.98[ASN][1000 genomes]
rs59371748	0.98[ASN][1000 genomes]
rs59775607	0.98[ASN][1000 genomes]
rs6036373	0.98[ASN][1000 genomes]
rs60763856	0.98[ASN][1000 genomes]
rs61259462	0.98[ASN][1000 genomes]
rs61322006	0.98[ASN][1000 genomes]
rs61594626	0.98[ASN][1000 genomes]
rs7264784	0.98[ASN][1000 genomes]
rs7267816	0.98[ASN][1000 genomes]
rs7269309	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7270669	0.98[ASN][1000 genomes]
rs7270895	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7270957	0.98[ASN][1000 genomes]
rs73316999	0.98[ASN][1000 genomes]
rs73319039	0.98[ASN][1000 genomes]
rs73319041	0.98[ASN][1000 genomes]
rs73904242	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066734	chr20:23170094-23277628	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv458948	chr20:23234699-23292849	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv585721	chr20:23234699-23292849	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23253200-23274400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:23269200-23277200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr20:23271000-23274800	Weak transcription	Small Intestine	intestine
4	chr20:23271200-23277000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr20:23271800-23274200	Weak transcription	Right Atrium	heart
6	chr20:23271800-23276800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr20:23272000-23274000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr20:23272000-23274200	Weak transcription	Lung	lung
9	chr20:23272200-23273400	Weak transcription	Spleen	Spleen
10	chr20:23272400-23277000	Weak transcription	NHDF-Ad	bronchial
11	chr20:23272800-23277400	Weak transcription	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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