Variant report

Variant	rs58496407
Chromosome Location	chr20:23292416-23292417
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:23129251..23133596-chr20:23289860..23293957,6	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11905535	1.00[ASN][1000 genomes]
rs11907155	1.00[ASN][1000 genomes]
rs2405228	1.00[ASN][1000 genomes]
rs56752409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56848262	1.00[ASN][1000 genomes]
rs57270728	1.00[ASN][1000 genomes]
rs57666968	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58071233	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58950746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59146474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59371748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59775607	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6036373	1.00[ASN][1000 genomes]
rs6048686	0.98[ASN][1000 genomes]
rs60763856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61259462	1.00[ASN][1000 genomes]
rs61322006	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61594626	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7264784	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7267816	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7269309	1.00[ASN][1000 genomes]
rs7270669	1.00[ASN][1000 genomes]
rs7270895	1.00[ASN][1000 genomes]
rs7270957	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73316999	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73319039	1.00[ASN][1000 genomes]
rs73319041	1.00[ASN][1000 genomes]
rs73904242	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv458948	chr20:23234699-23292849	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv585721	chr20:23234699-23292849	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23285600-23301200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:23292000-23293200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr20:23292000-23293600	Enhancers	K562	blood
4	chr20:23292400-23292600	Weak transcription	Right Atrium	heart
5	chr20:23292400-23293000	Enhancers	Spleen	Spleen

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