Variant report

Variant	rs60760690
Chromosome Location	chr2:211086774-211086775
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs56301246	1.00[AMR][1000 genomes]
rs56839181	1.00[AMR][1000 genomes]
rs57873720	1.00[AMR][1000 genomes]
rs60728418	1.00[AMR][1000 genomes]
rs6739874	1.00[AMR][1000 genomes]
rs6745814	1.00[AMR][1000 genomes]
rs73984331	1.00[AMR][1000 genomes]
rs73984335	1.00[AMR][1000 genomes]
rs73984336	1.00[AMR][1000 genomes]
rs73984340	1.00[AMR][1000 genomes]
rs73984343	1.00[AMR][1000 genomes]
rs73984344	0.91[AFR][1000 genomes]
rs73984345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73984346	1.00[AMR][1000 genomes]
rs73984351	1.00[AMR][1000 genomes]
rs73984352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73984374	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795338	chr2:210758078-211098113	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv1802749	chr2:210905194-211255611	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	esv1803710	chr2:211073376-211173763	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:211060400-211089000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr2:211067800-211089200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:211080200-211089400	Weak transcription	Gastric	stomach
4	chr2:211085600-211087400	Enhancers	Aorta	Aorta
5	chr2:211086600-211086800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr2:211086600-211087600	Enhancers	Pancreas	Pancrea
7	chr2:211086600-211088200	Enhancers	Liver	Liver
8	chr2:211086600-211088400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr2:211086600-211088600	Enhancers	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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