Variant report

Variant	rs6739874
Chromosome Location	chr2:211061670-211061671
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs56301246	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56839181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57873720	1.00[AMR][1000 genomes]
rs60728418	1.00[AMR][1000 genomes]
rs60760690	1.00[AMR][1000 genomes]
rs6745814	1.00[AMR][1000 genomes]
rs73984331	1.00[AMR][1000 genomes]
rs73984335	1.00[AMR][1000 genomes]
rs73984336	1.00[AMR][1000 genomes]
rs73984340	1.00[AMR][1000 genomes]
rs73984343	1.00[AMR][1000 genomes]
rs73984345	1.00[AMR][1000 genomes]
rs73984346	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73984351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73984352	1.00[AMR][1000 genomes]
rs73984374	1.00[AMR][1000 genomes]
rs7598431	1.00[ASW][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431969	chr2:210682494-211074494	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv1795338	chr2:210758078-211098113	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	esv1802749	chr2:210905194-211255611	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:211051000-211086600	Weak transcription	Adipose Nuclei	Adipose
2	chr2:211052200-211085600	Weak transcription	Aorta	Aorta
3	chr2:211052400-211067400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr2:211060200-211062800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr2:211060200-211063200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr2:211060200-211086600	Weak transcription	Pancreas	Pancrea
7	chr2:211060400-211062400	Weak transcription	Liver	Liver
8	chr2:211060400-211062400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr2:211060400-211062800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr2:211060400-211063000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr2:211060400-211063000	Weak transcription	NHEK	skin
12	chr2:211060400-211063200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr2:211060400-211063200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr2:211060400-211063200	Weak transcription	Dnd41	blood
15	chr2:211060400-211063200	Weak transcription	NH-A	brain
16	chr2:211060400-211066000	Weak transcription	NHLF	lung
17	chr2:211060400-211078600	Weak transcription	Fetal Muscle Leg	muscle
18	chr2:211060400-211089000	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr2:211060800-211064400	Weak transcription	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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