Variant report

Variant	rs60769119
Chromosome Location	chr18:11732207-11732208
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13380905	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs60956367	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7237586	1.00[EUR][1000 genomes]
rs73397871	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73397875	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73397878	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73397879	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73397881	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73397882	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73397885	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73397887	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73397890	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73397898	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73397900	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9945241	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362008	chr18:11647654-11959830	Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1065382	chr18:11723230-11769732	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:11727400-11733200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr18:11727600-11733200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr18:11729800-11732800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr18:11730000-11732800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr18:11730000-11733200	Weak transcription	HMEC	breast
6	chr18:11730000-11733200	Weak transcription	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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