Variant report

Variant	rs73397898
Chromosome Location	chr18:11755579-11755580
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13380905	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60769119	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs60956367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7237586	0.83[EUR][1000 genomes]
rs73397871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73397875	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73397878	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73397879	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73397881	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73397882	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73397885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73397887	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73397890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73397900	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9945241	0.83[EUR][1000 genomes]
rs9947140	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362008	chr18:11647654-11959830	Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1065382	chr18:11723230-11769732	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:11751600-11756200	Active TSS	Brain Anterior Caudate	brain
2	chr18:11752800-11767200	Weak transcription	Aorta	Aorta
3	chr18:11752800-11774000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr18:11753000-11757200	Weak transcription	Pancreas	Pancrea
5	chr18:11753000-11759400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr18:11753000-11760800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr18:11753000-11760800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr18:11753000-11767200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr18:11753000-11767200	Weak transcription	Esophagus	oesophagus
10	chr18:11753000-11768000	Weak transcription	HMEC	breast
11	chr18:11753000-11774800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr18:11753000-11775400	Weak transcription	Gastric	stomach
13	chr18:11753200-11755600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr18:11754000-11765400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr18:11754800-11756000	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr18:11754800-11758800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr18:11755000-11765400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr18:11755200-11765600	Weak transcription	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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