Variant report

Variant	rs6077958
Chromosome Location	chr20:10903249-10903250
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:10902696..10903676-chr8:43093278..43093908,2	MCF-7	breast:
2	chr20:10892560..10894435-chr20:10901123..10903841,2	MCF-7	breast:
3	chr20:10652269..10654577-chr20:10901037..10905418,3	MCF-7	breast:
4	chr20:10903176..10903676-chr8:43094374..43095042,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000270792	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1409860	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4142362	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6077955	0.93[EUR][1000 genomes]
rs6077959	0.81[EUR][1000 genomes]
rs6077961	0.81[EUR][1000 genomes]
rs7268812	0.87[ASN][1000 genomes]
rs73604346	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv912663	chr20:10891798-10963675	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv2758513	chr20:10892138-11116725	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv2758781	chr20:10892138-11116725	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:10891800-10904800	Weak transcription	Lung	lung
2	chr20:10899400-10903400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr20:10899600-10906400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr20:10899800-10903400	Enhancers	NHDF-Ad	bronchial
5	chr20:10900000-10903400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr20:10900000-10906800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr20:10900000-10906800	Enhancers	HMEC	breast
8	chr20:10900600-10904000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr20:10900600-10908000	Weak transcription	Right Atrium	heart
10	chr20:10900800-10903400	Weak transcription	Hela-S3	cervix
11	chr20:10900800-10903400	Enhancers	NHEK	skin
12	chr20:10900800-10905800	Weak transcription	Spleen	Spleen
13	chr20:10901000-10907800	Weak transcription	Ovary	ovary
14	chr20:10901000-10920200	Weak transcription	Aorta	Aorta
15	chr20:10901200-10907000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr20:10901400-10903800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr20:10902000-10903800	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr20:10902200-10903800	Enhancers	Osteobl	bone
19	chr20:10902600-10903400	Enhancers	Muscle Satellite Cultured Cells	--
20	chr20:10902600-10905000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr20:10902600-10906000	Enhancers	Fetal Lung	lung
22	chr20:10902600-10906800	Enhancers	NHLF	lung
23	chr20:10902800-10904000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr20:10902800-10904200	Enhancers	NH-A	brain
25	chr20:10902800-10905800	Enhancers	HSMM	muscle
26	chr20:10902800-10906200	Enhancers	Fetal Stomach	stomach
27	chr20:10903000-10903400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr20:10903000-10903600	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr20:10903000-10904200	Enhancers	Adipose Nuclei	Adipose
30	chr20:10903000-10906800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr20:10903200-10903600	Enhancers	Fetal Kidney	kidney
32	chr20:10903200-10903800	Enhancers	Duodenum Smooth Muscle	Duodenum
33	chr20:10903200-10904000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr20:10903200-10904000	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr20:10903200-10904000	Enhancers	Pancreas	Pancrea
36	chr20:10903200-10904200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
37	chr20:10903200-10904200	Enhancers	Fetal Muscle Leg	muscle
38	chr20:10903200-10904200	Enhancers	Placenta	Placenta
39	chr20:10903200-10904200	Flanking Active TSS	A549	lung
40	chr20:10903200-10904400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr20:10903200-10904400	Enhancers	HUVEC	blood vessel
42	chr20:10903200-10906200	Enhancers	HSMMtube	muscle
43	chr20:10903200-10906400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr20:10903200-10906800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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