Variant report

Variant	rs6077959
Chromosome Location	chr20:10907416-10907417
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1409860	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4142362	0.82[EUR][1000 genomes]
rs6077958	0.81[EUR][1000 genomes]
rs6077961	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv912663	chr20:10891798-10963675	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv2758513	chr20:10892138-11116725	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv2758781	chr20:10892138-11116725	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv912664	chr20:10907037-10963675	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:10900600-10908000	Weak transcription	Right Atrium	heart
2	chr20:10901000-10907800	Weak transcription	Ovary	ovary
3	chr20:10901000-10920200	Weak transcription	Aorta	Aorta
4	chr20:10904000-10909400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr20:10904200-10909000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr20:10904200-10909000	Weak transcription	Adipose Nuclei	Adipose
7	chr20:10904200-10909200	Weak transcription	Fetal Muscle Leg	muscle
8	chr20:10904200-10909400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr20:10905000-10908600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr20:10905000-10909800	Weak transcription	Psoas Muscle	Psoas
11	chr20:10905800-10908200	Weak transcription	HSMM	muscle
12	chr20:10906000-10907800	Weak transcription	Fetal Lung	lung
13	chr20:10906000-10907800	Weak transcription	Pancreas	Pancrea
14	chr20:10906000-10908400	Weak transcription	NH-A	brain
15	chr20:10906000-10908800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr20:10906200-10907800	Weak transcription	HSMMtube	muscle
17	chr20:10906200-10909000	Weak transcription	Fetal Stomach	stomach
18	chr20:10906200-10909200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr20:10906400-10909000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr20:10906400-10909000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr20:10906800-10908000	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr20:10906800-10908000	Weak transcription	Spleen	Spleen
23	chr20:10906800-10908000	Weak transcription	Osteobl	bone
24	chr20:10906800-10908200	Weak transcription	HMEC	breast
25	chr20:10906800-10908600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr20:10906800-10908600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr20:10906800-10909000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr20:10906800-10909000	Weak transcription	NHLF	lung
29	chr20:10906800-10914800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr20:10907000-10908600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr20:10907400-10908000	Weak transcription	HUVEC	blood vessel
32	chr20:10907400-10908200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links