Variant report

Variant	rs6078168
Chromosome Location	chr20:11384778-11384779
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11700189	0.80[ASN][1000 genomes]
rs6074298	0.95[ASN][1000 genomes]
rs6074301	0.80[ASN][1000 genomes]
rs6078190	0.81[ASN][1000 genomes]
rs6108988	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv432099	chr20:11371093-11476900	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1061567	chr20:11379484-11405302	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11380000-11394200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr20:11383400-11385000	Enhancers	Colon Smooth Muscle	Colon
3	chr20:11383600-11385400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr20:11383800-11385000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr20:11383800-11385000	Enhancers	Osteobl	bone
6	chr20:11383800-11385200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr20:11383800-11385200	Enhancers	Rectal Smooth Muscle	rectum
8	chr20:11384400-11384800	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr20:11384400-11385000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr20:11384400-11385000	Enhancers	Ovary	ovary
11	chr20:11384400-11385000	Enhancers	Psoas Muscle	Psoas
12	chr20:11384600-11384800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr20:11384600-11384800	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr20:11384600-11385000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr20:11384600-11385000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr20:11384600-11385000	Enhancers	Right Atrium	heart
17	chr20:11384600-11385000	Enhancers	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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