Variant report

Variant	rs6074298
Chromosome Location	chr20:11382312-11382313
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11696977	0.84[EUR][1000 genomes]
rs11700189	0.83[EUR][1000 genomes]
rs2103761	0.81[EUR][1000 genomes]
rs2207911	0.82[EUR][1000 genomes]
rs6074294	0.85[EUR][1000 genomes]
rs6074301	0.87[EUR][1000 genomes]
rs6078144	0.84[EUR][1000 genomes]
rs6078147	0.84[EUR][1000 genomes]
rs6078168	0.95[ASN][1000 genomes]
rs6104745	0.85[EUR][1000 genomes]
rs6108958	0.82[EUR][1000 genomes]
rs6108988	0.83[EUR][1000 genomes]
rs728487	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv585415	chr20:11134907-11383327	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv432099	chr20:11371093-11476900	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1061567	chr20:11379484-11405302	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11376200-11383800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr20:11376600-11383600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr20:11376800-11382600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr20:11379400-11383800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr20:11379600-11383800	Weak transcription	Osteobl	bone
6	chr20:11380000-11394200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr20:11380600-11382400	Weak transcription	NHEK	skin
8	chr20:11380600-11384600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr20:11381600-11382600	Enhancers	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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