Variant report

Variant	rs11696977
Chromosome Location	chr20:11356147-11356148
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2327399	0.95[ASN][1000 genomes]
rs6074294	0.99[EUR][1000 genomes]
rs6074298	0.84[EUR][1000 genomes]
rs6078138	0.95[ASN][1000 genomes]
rs6078143	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6078144	1.00[EUR][1000 genomes]
rs6078147	1.00[EUR][1000 genomes]
rs6104739	0.95[ASN][1000 genomes]
rs6104745	0.99[EUR][1000 genomes]
rs6108909	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv585415	chr20:11134907-11383327	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11345400-11360000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:11346600-11358600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr20:11346800-11360000	Weak transcription	Psoas Muscle	Psoas
4	chr20:11350400-11356600	Weak transcription	Fetal Kidney	kidney
5	chr20:11350400-11360200	Weak transcription	Pancreas	Pancrea
6	chr20:11351200-11358600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr20:11352000-11358800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr20:11352800-11358600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr20:11353600-11359400	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr20:11353800-11356400	Enhancers	Hela-S3	cervix
11	chr20:11354000-11358600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr20:11354000-11358600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr20:11354200-11358800	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr20:11354400-11356400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr20:11354400-11358600	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr20:11354400-11358800	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr20:11354400-11358800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr20:11354400-11358800	Weak transcription	Esophagus	oesophagus
19	chr20:11354400-11359000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr20:11354400-11359200	Enhancers	HMEC	breast
21	chr20:11354400-11359600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr20:11354400-11360000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr20:11354600-11356200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr20:11354600-11356800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr20:11354600-11358800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr20:11354600-11359800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr20:11354600-11360000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr20:11354600-11360000	Weak transcription	Fetal Muscle Leg	muscle
29	chr20:11354600-11360000	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr20:11354600-11360200	Weak transcription	Spleen	Spleen
31	chr20:11354800-11357800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr20:11355400-11359200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr20:11355800-11357600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr20:11355800-11358200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr20:11355800-11358600	Enhancers	NH-A	brain
36	chr20:11356000-11356600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr20:11356000-11358400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr20:11356000-11358400	Enhancers	Osteobl	bone
39	chr20:11356000-11358800	Enhancers	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links