Variant report

Variant	rs6078144
Chromosome Location	chr20:11355486-11355487
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11696977	1.00[EUR][1000 genomes]
rs11698064	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13038948	0.92[ASN][1000 genomes]
rs13039061	0.91[ASN][1000 genomes]
rs13043539	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1535071	0.96[ASN][1000 genomes]
rs1535072	0.98[ASN][1000 genomes]
rs17800232	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2327402	0.96[ASN][1000 genomes]
rs28479511	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6074279	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6074281	0.91[ASN][1000 genomes]
rs6074283	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6074287	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6074294	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6074298	0.84[EUR][1000 genomes]
rs6078132	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6078136	0.91[ASN][1000 genomes]
rs6078140	0.92[ASN][1000 genomes]
rs6078141	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6078147	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6104738	0.93[ASN][1000 genomes]
rs6104745	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6108906	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv585415	chr20:11134907-11383327	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11345400-11360000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:11346600-11358600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr20:11346800-11360000	Weak transcription	Psoas Muscle	Psoas
4	chr20:11347800-11356000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr20:11350400-11356600	Weak transcription	Fetal Kidney	kidney
6	chr20:11350400-11360200	Weak transcription	Pancreas	Pancrea
7	chr20:11351200-11358600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr20:11352000-11358800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr20:11352800-11358600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr20:11353600-11359400	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr20:11353800-11356400	Enhancers	Hela-S3	cervix
12	chr20:11354000-11358600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr20:11354000-11358600	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr20:11354200-11358800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr20:11354400-11356400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr20:11354400-11358600	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr20:11354400-11358800	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr20:11354400-11358800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr20:11354400-11358800	Weak transcription	Esophagus	oesophagus
20	chr20:11354400-11359000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr20:11354400-11359200	Enhancers	HMEC	breast
22	chr20:11354400-11359600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr20:11354400-11360000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr20:11354600-11355800	Weak transcription	NH-A	brain
25	chr20:11354600-11356200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr20:11354600-11356800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr20:11354600-11358800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr20:11354600-11359800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr20:11354600-11360000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr20:11354600-11360000	Weak transcription	Fetal Muscle Leg	muscle
31	chr20:11354600-11360000	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr20:11354600-11360200	Weak transcription	Spleen	Spleen
33	chr20:11354800-11357800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr20:11355400-11359200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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