Variant report

Variant	rs6078136
Chromosome Location	chr20:11315932-11315933
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11698064	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13038948	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13039061	0.98[ASN][1000 genomes]
rs13043539	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1535071	0.92[ASN][1000 genomes]
rs1535072	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17800232	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1997876	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1997877	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2327399	0.84[EUR][1000 genomes]
rs2327402	0.92[ASN][1000 genomes]
rs28479511	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6033092	0.85[EUR][1000 genomes]
rs6033095	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6040515	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6074279	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6074281	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6074283	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6074287	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6074294	0.87[ASN][1000 genomes]
rs6078118	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6078132	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6078138	0.95[EUR][1000 genomes]
rs6078140	0.96[ASN][1000 genomes]
rs6078141	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6078143	0.88[EUR][1000 genomes]
rs6078144	0.91[ASN][1000 genomes]
rs6078147	0.93[ASN][1000 genomes]
rs6104738	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6104739	0.94[EUR][1000 genomes]
rs6104745	0.89[ASN][1000 genomes]
rs6108906	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6108909	0.97[EUR][1000 genomes]
rs722568	0.82[ASN][1000 genomes]
rs988788	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv585415	chr20:11134907-11383327	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11312000-11323200	Weak transcription	Psoas Muscle	Psoas
2	chr20:11313000-11317200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr20:11314000-11323000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr20:11314600-11317200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr20:11315400-11316000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr20:11315400-11316200	Enhancers	Fetal Intestine Large	intestine
7	chr20:11315400-11316800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr20:11315400-11318000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr20:11315600-11316000	Weak transcription	Fetal Lung	lung
10	chr20:11315600-11318000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr20:11315600-11318200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr20:11315800-11316200	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr20:11315800-11317400	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr20:11315800-11317600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr20:11315800-11317800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr20:11315800-11317800	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr20:11315800-11317800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr20:11315800-11319200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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