Variant report

Variant	rs988788
Chromosome Location	chr20:11262249-11262250
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11698064	0.80[EUR][1000 genomes]
rs13038948	0.82[EUR][1000 genomes]
rs17800232	0.85[EUR][1000 genomes]
rs1997876	0.89[EUR][1000 genomes]
rs1997877	0.89[EUR][1000 genomes]
rs6033092	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6033095	0.89[EUR][1000 genomes]
rs6040515	0.89[EUR][1000 genomes]
rs6074279	0.85[EUR][1000 genomes]
rs6074281	0.85[EUR][1000 genomes]
rs6074283	0.82[EUR][1000 genomes]
rs6078118	0.89[EUR][1000 genomes]
rs6078132	0.84[EUR][1000 genomes]
rs6078136	0.85[EUR][1000 genomes]
rs6078138	0.82[CEU][hapmap];0.89[CHB][hapmap];0.80[EUR][1000 genomes]
rs6104738	0.80[EUR][1000 genomes]
rs6108906	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs6108909	0.88[CEU][hapmap];0.82[JPT][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv585415	chr20:11134907-11383327	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv3292	chr20:11233247-11267986	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv962542	chr20:11258447-11264942	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11258600-11270200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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