Variant report

Variant	rs11698064
Chromosome Location	chr20:11333305-11333306
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs13038948	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13039061	0.98[ASN][1000 genomes]
rs13043539	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1535071	0.94[ASN][1000 genomes]
rs1535072	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17800232	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1997876	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1997877	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2327399	0.89[EUR][1000 genomes]
rs2327402	0.94[ASN][1000 genomes]
rs28479511	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6033092	0.80[EUR][1000 genomes]
rs6033095	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6040515	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6074279	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6074281	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6074283	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6074287	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6074294	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6078118	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6078132	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6078136	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6078138	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];1.00[EUR][1000 genomes]
rs6078140	0.99[ASN][1000 genomes]
rs6078141	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6078143	0.93[EUR][1000 genomes]
rs6078144	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6078147	0.95[ASN][1000 genomes]
rs6104738	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6104739	0.99[EUR][1000 genomes]
rs6104745	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6108906	0.92[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6108909	0.92[CEU][hapmap];0.82[JPT][hapmap];0.92[EUR][1000 genomes]
rs722568	0.82[ASN][1000 genomes]
rs988788	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv585415	chr20:11134907-11383327	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11330600-11333400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr20:11330600-11334400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr20:11330800-11333600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr20:11330800-11334200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr20:11330800-11336200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr20:11331000-11338400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr20:11331200-11333800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr20:11331400-11333400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr20:11331800-11333400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr20:11332000-11333400	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr20:11332200-11334200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr20:11332400-11334200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr20:11332400-11334800	Weak transcription	HMEC	breast
14	chr20:11332400-11336200	Weak transcription	Psoas Muscle	Psoas
15	chr20:11332400-11337400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr20:11332600-11333800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr20:11333000-11333600	Enhancers	H9 Cell Line	embryonic stem cell
18	chr20:11333000-11333600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr20:11333000-11334200	Enhancers	Fetal Lung	lung
20	chr20:11333000-11335800	Weak transcription	Brain Germinal Matrix	brain

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