Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1008232	0.81[EUR][1000 genomes]
rs11698064	0.82[ASN][1000 genomes]
rs13038948	0.83[ASN][1000 genomes]
rs13039061	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1535071	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17800232	0.82[ASN][1000 genomes]
rs1997876	0.97[ASN][1000 genomes]
rs1997877	0.97[ASN][1000 genomes]
rs2327402	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6033095	0.96[ASN][1000 genomes]
rs6040515	0.97[ASN][1000 genomes]
rs6074279	0.81[ASN][1000 genomes]
rs6074281	0.82[ASN][1000 genomes]
rs6074283	0.80[ASN][1000 genomes]
rs6078118	0.95[ASN][1000 genomes]
rs6078132	0.82[ASN][1000 genomes]
rs6078136	0.82[ASN][1000 genomes]
rs6078140	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6104738	0.82[ASN][1000 genomes]
rs6108906	0.82[CEU][hapmap];0.91[CHD][hapmap];0.83[ASN][1000 genomes]
rs6108909	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv585415	chr20:11134907-11383327	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv458869	chr20:11271614-11306751	Enhancers Weak transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv585417	chr20:11271614-11306751	Weak transcription Enhancers ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11282800-11286000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr20:11283600-11285400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr20:11283600-11285400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr20:11283600-11285400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr20:11283600-11285400	Weak transcription	HMEC	breast
6	chr20:11283800-11285400	Weak transcription	NHEK	skin

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