Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11698064	0.98[ASN][1000 genomes]
rs13038948	0.99[ASN][1000 genomes]
rs13043539	0.93[ASN][1000 genomes]
rs1535071	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1535072	0.93[ASN][1000 genomes]
rs17800232	0.98[ASN][1000 genomes]
rs1997876	0.82[ASN][1000 genomes]
rs1997877	0.82[ASN][1000 genomes]
rs2327402	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28479511	0.93[ASN][1000 genomes]
rs6033095	0.81[ASN][1000 genomes]
rs6040515	0.82[ASN][1000 genomes]
rs6074279	0.96[ASN][1000 genomes]
rs6074281	0.98[ASN][1000 genomes]
rs6074283	0.95[ASN][1000 genomes]
rs6074287	0.93[ASN][1000 genomes]
rs6074294	0.87[ASN][1000 genomes]
rs6078132	0.98[ASN][1000 genomes]
rs6078136	0.98[ASN][1000 genomes]
rs6078140	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6078141	0.93[ASN][1000 genomes]
rs6078144	0.91[ASN][1000 genomes]
rs6078147	0.93[ASN][1000 genomes]
rs6104738	0.98[ASN][1000 genomes]
rs6104745	0.89[ASN][1000 genomes]
rs6108906	0.94[ASN][1000 genomes]
rs722568	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv585415	chr20:11134907-11383327	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11323400-11323800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr20:11323400-11323800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr20:11323400-11323800	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr20:11323600-11325600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr20:11323600-11331000	Weak transcription	Psoas Muscle	Psoas

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