Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11696977	0.99[EUR][1000 genomes]
rs11698064	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13038948	0.88[ASN][1000 genomes]
rs13039061	0.87[ASN][1000 genomes]
rs13043539	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1535071	0.93[ASN][1000 genomes]
rs1535072	0.94[ASN][1000 genomes]
rs17800232	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2327402	0.93[ASN][1000 genomes]
rs28479511	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6074279	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6074281	0.87[ASN][1000 genomes]
rs6074283	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6074287	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6074298	0.85[EUR][1000 genomes]
rs6078132	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6078136	0.87[ASN][1000 genomes]
rs6078140	0.88[ASN][1000 genomes]
rs6078141	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6078144	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6078147	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6078164	0.80[EUR][1000 genomes]
rs6104738	0.90[ASN][1000 genomes]
rs6104745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6108906	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv585415	chr20:11134907-11383327	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11359200-11361600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr20:11360000-11361800	Enhancers	GM12878-XiMat	blood
3	chr20:11360600-11361400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr20:11360800-11361400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr20:11361200-11361600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr20:11361200-11361600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr20:11361200-11361800	Genic enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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