The 2.0 version of rSNPBase

Variant report

Variant rs6078147
Chromosome Location chr20:11356622-11356623
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:43 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:11345400-11360000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
2 chr20:11346600-11358600 Weak transcription H9 Cell Line embryonic stem cell
3 chr20:11346800-11360000 Weak transcription Psoas Muscle Psoas
4 chr20:11350400-11360200 Weak transcription Pancreas Pancrea
5 chr20:11351200-11358600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
6 chr20:11352000-11358800 Weak transcription iPS-15b Cell Line embryonic stem cell
7 chr20:11352800-11358600 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
8 chr20:11353600-11359400 Enhancers Breast Myoepithelial Primary Cells Breast
9 chr20:11354000-11358600 Weak transcription ES-I3 Cell Line embryonic stem cell
10 chr20:11354000-11358600 Weak transcription HUES6 Cell Line embryonic stem cell
11 chr20:11354200-11358800 Weak transcription HUES48 Cell Line embryonic stem cell
12 chr20:11354400-11358600 Weak transcription H1 Cell Line embryonic stem cell
13 chr20:11354400-11358800 Weak transcription HUES64 Cell Line embryonic stem cell
14 chr20:11354400-11358800 Weak transcription iPS-18 Cell Line embryonic stem cell
15 chr20:11354400-11358800 Weak transcription Esophagus oesophagus
16 chr20:11354400-11359000 Weak transcription iPS-20b Cell Line embryonic stem cell
17 chr20:11354400-11359200 Enhancers HMEC breast
18 chr20:11354400-11359600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
19 chr20:11354400-11360000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
20 chr20:11354600-11356800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
21 chr20:11354600-11358800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
22 chr20:11354600-11359800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
23 chr20:11354600-11360000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
24 chr20:11354600-11360000 Weak transcription Fetal Muscle Leg muscle
25 chr20:11354600-11360000 Weak transcription Skeletal Muscle Female skeletal muscle
26 chr20:11354600-11360200 Weak transcription Spleen Spleen
27 chr20:11354800-11357800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
28 chr20:11355400-11359200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
29 chr20:11355800-11357600 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
30 chr20:11355800-11358200 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
31 chr20:11355800-11358600 Enhancers NH-A brain
32 chr20:11356000-11358400 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
33 chr20:11356000-11358400 Enhancers Osteobl bone
34 chr20:11356000-11358800 Enhancers NHEK skin
35 chr20:11356200-11356800 Weak transcription NHLF lung
36 chr20:11356200-11357000 Enhancers Duodenum Mucosa Duodenum
37 chr20:11356200-11357000 Enhancers Rectal Mucosa Donor 31 rectum
38 chr20:11356200-11357000 Enhancers Sigmoid Colon Sigmoid Colon
39 chr20:11356200-11358000 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
40 chr20:11356400-11357000 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
41 chr20:11356600-11356800 Enhancers Hela-S3 cervix
42 chr20:11356600-11357200 Enhancers Fetal Kidney kidney
43 chr20:11356600-11360000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015