Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11698064	0.94[ASN][1000 genomes]
rs13038948	0.93[ASN][1000 genomes]
rs13039061	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13043539	0.99[ASN][1000 genomes]
rs1535071	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1535072	0.99[ASN][1000 genomes]
rs17800232	0.92[ASN][1000 genomes]
rs28479511	0.99[ASN][1000 genomes]
rs6074279	0.91[ASN][1000 genomes]
rs6074281	0.92[ASN][1000 genomes]
rs6074283	0.90[ASN][1000 genomes]
rs6074287	0.99[ASN][1000 genomes]
rs6074294	0.93[ASN][1000 genomes]
rs6078132	0.92[ASN][1000 genomes]
rs6078136	0.92[ASN][1000 genomes]
rs6078140	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6078141	0.99[ASN][1000 genomes]
rs6078144	0.96[ASN][1000 genomes]
rs6078147	0.99[ASN][1000 genomes]
rs6104738	0.94[ASN][1000 genomes]
rs6104745	0.95[ASN][1000 genomes]
rs6108906	0.88[ASN][1000 genomes]
rs722568	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv585415	chr20:11134907-11383327	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11335000-11355400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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