Variant report

Variant	rs6040515
Chromosome Location	chr20:11274242-11274243
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11698064	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13038948	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13039061	0.82[ASN][1000 genomes]
rs13043539	0.86[EUR][1000 genomes]
rs1535072	0.86[EUR][1000 genomes]
rs17800232	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1997876	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1997877	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28479511	0.85[EUR][1000 genomes]
rs6033092	0.89[EUR][1000 genomes]
rs6033095	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6074279	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6074281	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6074283	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6074287	0.85[EUR][1000 genomes]
rs6078118	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6078132	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6078136	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6078138	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs6078140	0.81[ASN][1000 genomes]
rs6078141	0.85[EUR][1000 genomes]
rs6078143	0.84[EUR][1000 genomes]
rs6104738	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6104739	0.90[EUR][1000 genomes]
rs6108906	1.00[CEU][hapmap];0.87[CHD][hapmap];0.83[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6108909	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes]
rs722568	0.82[CEU][hapmap];0.85[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs988788	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv585415	chr20:11134907-11383327	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv458869	chr20:11271614-11306751	Enhancers Weak transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv585417	chr20:11271614-11306751	Weak transcription Enhancers ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11270600-11276800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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