Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11696977	0.95[ASN][1000 genomes]
rs11698064	0.99[EUR][1000 genomes]
rs13038948	0.97[EUR][1000 genomes]
rs13043539	0.95[EUR][1000 genomes]
rs1535072	0.95[EUR][1000 genomes]
rs17800232	0.94[EUR][1000 genomes]
rs1997876	0.90[EUR][1000 genomes]
rs1997877	0.90[EUR][1000 genomes]
rs2327399	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28479511	0.94[EUR][1000 genomes]
rs6033095	0.90[EUR][1000 genomes]
rs6040515	0.90[EUR][1000 genomes]
rs6040569	0.80[AFR][1000 genomes]
rs6040575	0.81[AFR][1000 genomes]
rs6040576	0.81[AFR][1000 genomes]
rs6074279	0.94[EUR][1000 genomes]
rs6074281	0.94[EUR][1000 genomes]
rs6074283	0.97[EUR][1000 genomes]
rs6074287	0.94[EUR][1000 genomes]
rs6078118	0.90[EUR][1000 genomes]
rs6078132	0.93[EUR][1000 genomes]
rs6078136	0.94[EUR][1000 genomes]
rs6078138	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6078141	0.94[EUR][1000 genomes]
rs6078143	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6104738	0.99[EUR][1000 genomes]
rs6108906	0.92[CEU][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes]
rs6108909	0.92[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv585415	chr20:11134907-11383327	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11330800-11336200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr20:11331000-11338400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr20:11332400-11334800	Weak transcription	HMEC	breast
4	chr20:11332400-11336200	Weak transcription	Psoas Muscle	Psoas
5	chr20:11332400-11337400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr20:11333000-11335800	Weak transcription	Brain Germinal Matrix	brain
7	chr20:11333600-11336200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr20:11333800-11335400	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr20:11334000-11335200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr20:11334200-11335000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr20:11334200-11335200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr20:11334400-11334800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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