Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr20:11330322-11330628	MCF10A-Er-Src	breast:	n/a	n/a
2	REST	chr20:11330520-11332657	H1-neurons	neurons:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:11330194..11333067-chr20:11363546..11365974,2	MCF-7	breast:

Variant related genes	Relation type
RPS11P1	TF binding region

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11696977	0.95[ASN][1000 genomes]
rs11698064	1.00[EUR][1000 genomes]
rs13038948	0.98[EUR][1000 genomes]
rs13043539	0.95[EUR][1000 genomes]
rs1535072	0.95[EUR][1000 genomes]
rs17800232	0.95[EUR][1000 genomes]
rs1997876	0.91[EUR][1000 genomes]
rs1997877	0.91[EUR][1000 genomes]
rs2327399	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28479511	0.94[EUR][1000 genomes]
rs6033092	0.80[EUR][1000 genomes]
rs6033095	0.91[EUR][1000 genomes]
rs6040515	0.91[EUR][1000 genomes]
rs6040569	0.83[AFR][1000 genomes]
rs6074279	0.95[EUR][1000 genomes]
rs6074281	0.95[EUR][1000 genomes]
rs6074283	0.98[EUR][1000 genomes]
rs6074287	0.94[EUR][1000 genomes]
rs6078118	0.91[EUR][1000 genomes]
rs6078132	0.94[EUR][1000 genomes]
rs6078136	0.95[EUR][1000 genomes]
rs6078141	0.94[EUR][1000 genomes]
rs6078143	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6104738	1.00[EUR][1000 genomes]
rs6104739	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6108906	0.92[CEU][hapmap];0.81[JPT][hapmap];0.91[EUR][1000 genomes]
rs6108909	0.92[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6108927	0.82[AFR][1000 genomes]
rs988788	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv585415	chr20:11134907-11383327	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11323600-11331000	Weak transcription	Psoas Muscle	Psoas
2	chr20:11329000-11332000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr20:11330000-11330600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr20:11330000-11330800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr20:11330400-11330800	Enhancers	NHEK	skin
6	chr20:11330400-11332000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr20:11330400-11332400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr20:11330400-11332600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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