Variant report

Variant	rs60783540
Chromosome Location	chr1:210954021-210954022
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs58479225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58497140	1.00[AMR][1000 genomes]
rs59663537	1.00[AMR][1000 genomes]
rs61116511	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74156071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74156073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74156077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74156079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74156080	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74156081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74156082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv873153	chr1:210900481-210994339	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv999018	chr1:210907239-210999306	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv832503	chr1:210948760-211103163	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210941800-210978000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:210944400-210965800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr1:210945000-210954800	Weak transcription	Brain Hippocampus Middle	brain
4	chr1:210946800-210965800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr1:210949600-210954600	Weak transcription	HSMMtube	muscle
6	chr1:210949800-210954800	Weak transcription	HSMM	muscle
7	chr1:210953400-210954400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr1:210953400-210974400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr1:210953600-210955000	Weak transcription	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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