Variant report

Variant	rs74156079
Chromosome Location	chr1:210970004-210970005
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs58479225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58497140	1.00[AMR][1000 genomes]
rs59663537	1.00[AMR][1000 genomes]
rs60783540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61116511	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74156071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74156073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74156077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74156080	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74156081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74156082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv873153	chr1:210900481-210994339	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv999018	chr1:210907239-210999306	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv832503	chr1:210948760-211103163	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210941800-210978000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:210953400-210974400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr1:210965800-210975600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:210966800-210976800	Weak transcription	A549	lung
5	chr1:210967000-210979600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr1:210967200-210970200	Weak transcription	Brain Anterior Caudate	brain
7	chr1:210967400-210973400	Weak transcription	Brain Angular Gyrus	brain
8	chr1:210967400-210985000	Weak transcription	Brain Hippocampus Middle	brain
9	chr1:210969600-210971200	Strong transcription	HSMM	muscle
10	chr1:210969800-210971000	Strong transcription	HSMMtube	muscle
11	chr1:210970000-210970800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr1:210970000-210971000	Strong transcription	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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