Variant report

Variant	rs60789199
Chromosome Location	chr6:30055983-30055984
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs17194055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28684426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28731260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58154054	0.97[AFR][1000 genomes]
rs7754777	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7764464	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9260802	0.83[AFR][1000 genomes]
rs9260811	0.83[AFR][1000 genomes]
rs9295827	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9295831	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9295834	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9295835	1.00[AMR][1000 genomes]
rs9461568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9468668	1.00[AMR][1000 genomes]
rs9468669	1.00[AMR][1000 genomes]
rs9468671	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9468678	1.00[AMR][1000 genomes]
rs9468679	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9468682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9468683	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9468687	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9468688	1.00[AMR][1000 genomes]
rs9501012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9501313	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031115	chr6:29934199-30058223	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv538172	chr6:29934199-30058223	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv432866	chr6:30026321-30080921	Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30048000-30058400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr6:30055600-30056400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:30055600-30056400	Enhancers	NHEK	skin
4	chr6:30055600-30059400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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