Variant report

Variant	rs9468688
Chromosome Location	chr6:30073129-30073130
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:30071292..30074099-chr6:30075439..30077084,2	K562	blood:
2	chr6:30068684..30075353-chr6:30179679..30184952,7	MCF-7	breast:
3	chr6:30072138..30074365-chr6:30079433..30082098,2	K562	blood:
4	chr6:30072893..30076173-chr6:30078690..30081417,3	MCF-7	breast:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TRIM40-3	chr6:30073017-30073164	ENSG00000231226.1
2	lnc-TRIM31-1	chr6:30072945-30073434	NONHSAT108598
3	lnc-TRIM31-1	chr6:30072945-30073217	NONHSAT108600

No data

No data

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs17194055	1.00[AMR][1000 genomes]
rs28684426	1.00[AMR][1000 genomes]
rs28731260	1.00[AMR][1000 genomes]
rs60789199	1.00[AMR][1000 genomes]
rs7754777	1.00[AMR][1000 genomes]
rs7764464	1.00[AMR][1000 genomes]
rs9295827	1.00[AMR][1000 genomes]
rs9295831	1.00[AMR][1000 genomes]
rs9295834	1.00[AMR][1000 genomes]
rs9295835	1.00[AMR][1000 genomes]
rs9461568	1.00[AMR][1000 genomes]
rs9468668	1.00[AMR][1000 genomes]
rs9468669	1.00[AMR][1000 genomes]
rs9468671	1.00[AMR][1000 genomes]
rs9468678	1.00[AMR][1000 genomes]
rs9468679	1.00[AMR][1000 genomes]
rs9468682	1.00[AMR][1000 genomes]
rs9468683	1.00[AMR][1000 genomes]
rs9468687	1.00[AMR][1000 genomes]
rs9501012	1.00[AMR][1000 genomes]
rs9501313	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432866	chr6:30026321-30080921	Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30070000-30075400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:30071400-30073200	Enhancers	Hela-S3	cervix
3	chr6:30071600-30079200	Weak transcription	Gastric	stomach
4	chr6:30071800-30073400	Weak transcription	HMEC	breast
5	chr6:30071800-30073800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:30071800-30074000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:30071800-30074800	Weak transcription	Spleen	Spleen
8	chr6:30072000-30074000	Weak transcription	Stomach Mucosa	stomach
9	chr6:30072200-30078000	Weak transcription	Colonic Mucosa	Colon
10	chr6:30073000-30073200	Enhancers	Fetal Intestine Small	intestine
11	chr6:30073000-30073200	Enhancers	Rectal Mucosa Donor 31	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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