Variant report

Variant	rs60790797
Chromosome Location	chr1:57875363-57875364
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10159302	1.00[ASN][1000 genomes]
rs10493218	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11800574	1.00[ASN][1000 genomes]
rs11803541	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11807631	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1424471	1.00[ASN][1000 genomes]
rs1424472	1.00[ASN][1000 genomes]
rs17096836	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17115683	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17115722	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17115739	0.92[EUR][1000 genomes]
rs17115757	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17115767	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1778031	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17838097	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1981891	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35664891	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3738552	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3850553	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3850554	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4309005	1.00[ASN][1000 genomes]
rs4912242	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4912245	0.80[EUR][1000 genomes]
rs507466	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs524941	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6657926	1.00[ASN][1000 genomes]
rs72909225	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72909227	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72909233	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72909243	1.00[ASN][1000 genomes]
rs72909245	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7541150	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7541309	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817216	chr1:57801783-58130775	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1001771	chr1:57837089-58068175	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57863800-57875400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr1:57867800-57875400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr1:57871000-57887600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:57873200-57877200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:57873600-57877600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr1:57874200-57878400	Enhancers	Hela-S3	cervix
7	chr1:57874400-57875600	Weak transcription	Fetal Heart	heart
8	chr1:57874400-57876000	Weak transcription	Fetal Brain Female	brain
9	chr1:57874400-57876400	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr1:57874400-57876800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr1:57874600-57875600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr1:57874600-57876200	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr1:57874600-57877000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr1:57874800-57875600	Weak transcription	Fetal Brain Male	brain
15	chr1:57874800-57876000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr1:57874800-57876200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr1:57874800-57876200	Weak transcription	Stomach Mucosa	stomach
18	chr1:57875000-57875400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr1:57875000-57875400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr1:57875000-57876200	Weak transcription	Stomach Smooth Muscle	stomach
21	chr1:57875200-57876800	Weak transcription	HSMMtube	muscle
22	chr1:57875200-57877400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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