Variant report

Variant	rs72909245
Chromosome Location	chr1:57883705-57883706
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10159302	1.00[ASN][1000 genomes]
rs10493218	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11800574	1.00[ASN][1000 genomes]
rs11803541	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11807631	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1424471	1.00[ASN][1000 genomes]
rs1424472	1.00[ASN][1000 genomes]
rs17096836	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17115683	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17115722	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17115739	0.92[EUR][1000 genomes]
rs17115757	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17115767	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1778031	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17838097	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1981891	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35664891	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3738552	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3850553	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3850554	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4309005	1.00[ASN][1000 genomes]
rs4912242	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4912245	0.80[EUR][1000 genomes]
rs507466	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs524941	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60790797	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6657926	1.00[ASN][1000 genomes]
rs72909225	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72909227	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72909233	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72909243	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7541150	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7541309	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817216	chr1:57801783-58130775	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1001771	chr1:57837089-58068175	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57871000-57887600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:57876200-57883800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr1:57880000-57884800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:57881800-57885000	Weak transcription	Fetal Brain Female	brain
5	chr1:57883400-57884400	Enhancers	Fetal Brain Male	brain
6	chr1:57883600-57883800	Enhancers	H1 Cell Line	embryonic stem cell
7	chr1:57883600-57883800	Enhancers	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links