Variant report

Variant	rs60794914
Chromosome Location	chr8:103369982-103369983
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:103366046..103370520-chr8:103377083..103381143,4	MCF-7	breast:
2	chr8:103366477..103368542-chr8:103369939..103372415,2	MCF-7	breast:
3	chr8:103367398..103369988-chr8:103373175..103375688,2	K562	blood:

Variant related genes	Relation type
ENSG00000104517	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13262662	0.83[AFR][1000 genomes]
rs36178006	0.85[AFR][1000 genomes]
rs4483125	0.85[AFR][1000 genomes]
rs59572423	0.85[AFR][1000 genomes]
rs59729747	1.00[AFR][1000 genomes]
rs60265889	1.00[AFR][1000 genomes]
rs60276445	1.00[AFR][1000 genomes]
rs61424257	1.00[AFR][1000 genomes]
rs73697220	0.81[AFR][1000 genomes]
rs73698724	1.00[AFR][1000 genomes]
rs73698727	1.00[AFR][1000 genomes]
rs73698738	0.90[AFR][1000 genomes]
rs73698788	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033829	chr8:103110057-103525696	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1021459	chr8:103163436-103401754	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv539701	chr8:103163436-103401754	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv1025935	chr8:103199207-103468322	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv1028890	chr8:103207922-103401754	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
6	nsv528486	chr8:103279922-103373304	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv891244	chr8:103309862-103483466	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
8	nsv831412	chr8:103337196-103536397	Genic enhancers Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
9	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
10	nsv1023938	chr8:103369215-103538708	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103330000-103375200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:103335400-103373200	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr8:103335400-103373400	Strong transcription	Fetal Thymus	thymus
4	chr8:103335400-103373600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
5	chr8:103335800-103370200	Strong transcription	Dnd41	blood
6	chr8:103337000-103380000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr8:103340800-103379400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr8:103344200-103373400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr8:103345400-103372000	Weak transcription	Small Intestine	intestine
10	chr8:103345400-103379800	Weak transcription	Aorta	Aorta
11	chr8:103346400-103373200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr8:103347400-103373400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr8:103348000-103373400	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr8:103353800-103373000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr8:103354000-103378400	Weak transcription	Fetal Brain Male	brain
16	chr8:103355000-103371000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr8:103355000-103379400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr8:103355000-103379400	Weak transcription	Psoas Muscle	Psoas
19	chr8:103355000-103379600	Weak transcription	Right Ventricle	heart
20	chr8:103355000-103380600	Weak transcription	Brain Angular Gyrus	brain
21	chr8:103355400-103373600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr8:103356600-103373200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr8:103357000-103370000	Strong transcription	Fetal Intestine Large	intestine
24	chr8:103357400-103372200	Strong transcription	GM12878-XiMat	blood
25	chr8:103357800-103371200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr8:103359200-103371200	Weak transcription	Fetal Kidney	kidney
27	chr8:103359200-103374600	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr8:103359400-103371000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr8:103359400-103375200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr8:103359800-103370200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr8:103359800-103371000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr8:103359800-103371000	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr8:103359800-103377800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr8:103359800-103379400	Weak transcription	Pancreas	Pancrea
35	chr8:103359800-103380600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr8:103360000-103371400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr8:103360200-103379600	Weak transcription	Spleen	Spleen
38	chr8:103360400-103380600	Weak transcription	Esophagus	oesophagus
39	chr8:103361000-103373400	Strong transcription	Placenta	Placenta
40	chr8:103361200-103372200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr8:103361400-103372000	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr8:103361400-103373200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
43	chr8:103361600-103371200	Weak transcription	Brain Anterior Caudate	brain
44	chr8:103361600-103371400	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr8:103361600-103372600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr8:103361600-103377400	Weak transcription	Colon Smooth Muscle	Colon
47	chr8:103362000-103373800	Strong transcription	HUES48 Cell Line	embryonic stem cell
48	chr8:103362200-103371000	Weak transcription	Brain Cingulate Gyrus	brain
49	chr8:103362200-103373400	Strong transcription	Primary T cells fromperipheralblood	blood
50	chr8:103362200-103373600	Strong transcription	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links