Variant report

Variant	rs73698724
Chromosome Location	chr8:103298880-103298881
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:103292030..103294873-chr8:103298040..103300852,2	MCF-7	breast:
2	chr8:103255240..103257395-chr8:103298115..103300069,2	MCF-7	breast:
3	chr8:103270450..103272206-chr8:103296928..103298886,2	MCF-7	breast:
4	chr8:103298397..103300610-chr8:103306655..103309037,2	MCF-7	breast:
5	chr8:103298686..103300294-chr8:103304892..103306650,2	K562	blood:

Variant related genes	Relation type
ENSG00000104517	Chromatin interaction
ENSG00000246263	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13262662	0.83[AFR][1000 genomes]
rs36178006	0.85[AFR][1000 genomes]
rs4483125	0.85[AFR][1000 genomes]
rs4734618	1.00[EUR][1000 genomes]
rs59572423	0.85[AFR][1000 genomes]
rs59729747	1.00[AFR][1000 genomes]
rs60265889	1.00[AFR][1000 genomes]
rs60276445	1.00[AFR][1000 genomes]
rs60794914	1.00[AFR][1000 genomes]
rs61424257	1.00[AFR][1000 genomes]
rs73697220	0.81[AFR][1000 genomes]
rs73698727	1.00[AFR][1000 genomes]
rs73698738	0.90[AFR][1000 genomes]
rs73698788	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020359	chr8:103109921-103318415	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1033829	chr8:103110057-103525696	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv1021459	chr8:103163436-103401754	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv539701	chr8:103163436-103401754	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	nsv1025935	chr8:103199207-103468322	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
6	nsv1018990	chr8:103207922-103357742	Genic enhancers Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
7	nsv539702	chr8:103207922-103357742	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
8	nsv1028890	chr8:103207922-103401754	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
9	nsv528486	chr8:103279922-103373304	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103252200-103318800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:103256000-103299000	Strong transcription	Primary B cells from peripheral blood	blood
3	chr8:103256000-103299000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr8:103256000-103299600	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr8:103256200-103299600	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr8:103257400-103299400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr8:103262400-103299400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr8:103262600-103299600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr8:103262600-103329800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr8:103262800-103299600	Strong transcription	HSMM	muscle
11	chr8:103263000-103299000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr8:103263000-103299000	Strong transcription	Liver	Liver
13	chr8:103263000-103299000	Strong transcription	Fetal Thymus	thymus
14	chr8:103263400-103299000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr8:103263400-103299000	Strong transcription	Dnd41	blood
16	chr8:103263400-103327800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr8:103263400-103327800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr8:103264000-103299000	Strong transcription	Primary T helper cells fromperipheralblood	blood
19	chr8:103264200-103299000	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr8:103266200-103299400	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr8:103266800-103329000	Strong transcription	HUES6 Cell Line	embryonic stem cell
22	chr8:103267400-103327800	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr8:103267400-103329000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
24	chr8:103267600-103327800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
25	chr8:103268000-103327200	Strong transcription	H1 Cell Line	embryonic stem cell
26	chr8:103268200-103327600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr8:103268200-103328000	Strong transcription	HUES64 Cell Line	embryonic stem cell
28	chr8:103268800-103308400	Strong transcription	Fetal Muscle Leg	muscle
29	chr8:103269400-103299200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr8:103275800-103299600	Strong transcription	Rectal Mucosa Donor 31	rectum
31	chr8:103281200-103299400	Strong transcription	Primary B cells from cord blood	blood
32	chr8:103282400-103299800	Weak transcription	Stomach Mucosa	stomach
33	chr8:103282600-103299600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr8:103284800-103299600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr8:103286000-103299600	Strong transcription	NHDF-Ad	bronchial
36	chr8:103286200-103300000	Strong transcription	HepG2	liver
37	chr8:103286400-103299400	Strong transcription	Adipose Nuclei	Adipose
38	chr8:103286400-103299600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr8:103286600-103299400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr8:103286600-103302000	Strong transcription	Primary neutrophils fromperipheralblood	blood
41	chr8:103287400-103299200	Strong transcription	Primary hematopoietic stem cells	blood
42	chr8:103287800-103302200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr8:103287800-103312800	Strong transcription	Cortex derived primary cultured neurospheres	brain
44	chr8:103288000-103299000	Strong transcription	Primary T cells from cord blood	blood
45	chr8:103293800-103299600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr8:103293800-103329200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr8:103295200-103299200	Genic enhancers	GM12878-XiMat	blood
48	chr8:103295400-103299600	Strong transcription	Skeletal Muscle Female	skeletal muscle
49	chr8:103295600-103299600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr8:103295800-103299000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--

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