Variant report

Variant	rs6080084
Chromosome Location	chr20:15986010-15986011
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11087157	1.00[ASN][1000 genomes]
rs11087158	0.83[CEU][hapmap];1.00[ASN][1000 genomes]
rs12625655	0.95[EUR][1000 genomes]
rs17711684	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2069316	0.83[CEU][hapmap]
rs6074990	0.83[CEU][hapmap];1.00[ASN][1000 genomes]
rs6074991	0.83[CEU][hapmap]
rs6074993	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6074994	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6080081	1.00[ASN][1000 genomes]
rs6080086	0.93[EUR][1000 genomes]
rs6080092	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6080097	0.93[CEU][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6080098	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62194207	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73109687	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73111714	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73111717	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73111735	0.95[EUR][1000 genomes]
rs73111739	0.95[EUR][1000 genomes]
rs7352926	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1065548	chr20:15971797-16023086	Enhancers Weak transcription Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15979000-16004200	Weak transcription	Primary B cells from peripheral blood	blood
2	chr20:15982800-15988600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr20:15983600-15987400	Weak transcription	Primary B cells from cord blood	blood
4	chr20:15984000-15986600	Enhancers	Fetal Heart	heart
5	chr20:15984000-15989200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr20:15984600-15987400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr20:15984600-15987800	Enhancers	Primary hematopoietic stem cells	blood
8	chr20:15984600-15987800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr20:15984800-15986200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr20:15984800-15986200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr20:15984800-15987600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr20:15985000-15986200	Weak transcription	Gastric	stomach
13	chr20:15985400-15987400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr20:15985600-15987200	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr20:15985600-15987400	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr20:15985600-15988800	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr20:15985800-15987000	Enhancers	Fetal Brain Female	brain
18	chr20:15985800-15987400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr20:15985800-15987600	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr20:15985800-15988200	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr20:15986000-15986400	Enhancers	Brain Anterior Caudate	brain
22	chr20:15986000-15987000	Enhancers	Brain Germinal Matrix	brain
23	chr20:15986000-15987400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr20:15986000-15987400	Enhancers	Fetal Brain Male	brain
25	chr20:15986000-15987600	Enhancers	H1 Cell Line	embryonic stem cell
26	chr20:15986000-15987600	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr20:15986000-15988000	Enhancers	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links