Variant report

Variant	rs62194207
Chromosome Location	chr20:16006128-16006129
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12625655	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17711684	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6074993	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6074994	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6080084	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6080086	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6080092	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6080097	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6080098	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73109687	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73111714	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73111717	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73111735	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73111739	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7352926	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1065548	chr20:15971797-16023086	Enhancers Weak transcription Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1059778	chr20:15999519-16165895	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv544207	chr20:15999519-16165895	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv585649	chr20:16004320-16066764	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15998400-16012000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr20:16003600-16007800	Weak transcription	Fetal Brain Female	brain
3	chr20:16004200-16006200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr20:16004200-16008800	Enhancers	Primary B cells from peripheral blood	blood
5	chr20:16004400-16006200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr20:16004400-16006200	Enhancers	Primary B cells from cord blood	blood
7	chr20:16004400-16006400	Enhancers	HSMMtube	muscle
8	chr20:16004600-16006400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr20:16004600-16006400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr20:16004600-16007200	Weak transcription	Brain Germinal Matrix	brain
11	chr20:16004800-16006400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr20:16004800-16007800	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr20:16005000-16006400	Enhancers	HSMM	muscle
14	chr20:16005000-16008600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr20:16005200-16006200	Enhancers	Ovary	ovary
16	chr20:16005200-16006400	Enhancers	Fetal Muscle Leg	muscle
17	chr20:16005200-16009800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr20:16005400-16007600	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr20:16005600-16006200	Enhancers	Primary hematopoietic stem cells	blood
20	chr20:16005800-16006400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr20:16006000-16006400	Enhancers	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links