Variant report

Variant	rs60816887
Chromosome Location	chr11:45335432-45335433
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10219177	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838442	0.88[EUR][1000 genomes]
rs10838443	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7118844	0.86[AFR][1000 genomes]
rs7122933	0.86[AFR][1000 genomes]
rs7123438	0.87[AFR][1000 genomes]
rs7130748	0.86[AFR][1000 genomes]
rs7480175	0.87[AFR][1000 genomes]
rs7925811	0.88[EUR][1000 genomes]
rs7926308	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45326400-45344200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:45334600-45336000	Enhancers	Fetal Brain Male	brain
3	chr11:45334800-45336000	Enhancers	Aorta	Aorta
4	chr11:45335000-45335800	Enhancers	Fetal Lung	lung
5	chr11:45335000-45336000	Enhancers	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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