Variant report

Variant	rs7118844
Chromosome Location	chr11:45322682-45322683
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10219177	0.90[AFR][1000 genomes]
rs1075778	0.88[JPT][hapmap]
rs10769134	0.88[JPT][hapmap]
rs10769135	0.88[JPT][hapmap]
rs10769136	0.86[JPT][hapmap];0.80[EUR][1000 genomes]
rs1077490	0.88[JPT][hapmap]
rs1077491	0.88[JPT][hapmap]
rs10838437	0.82[JPT][hapmap];0.84[TSI][hapmap]
rs10838443	0.89[AFR][1000 genomes]
rs10838444	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11038382	0.88[JPT][hapmap]
rs11038388	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11038390	0.95[ASN][1000 genomes]
rs11530155	0.94[ASN][1000 genomes]
rs12363398	0.88[JPT][hapmap]
rs12791607	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2289448	0.88[JPT][hapmap];0.81[EUR][1000 genomes]
rs2863178	0.82[JPT][hapmap]
rs2863181	0.88[JPT][hapmap]
rs2863182	0.88[JPT][hapmap];0.81[EUR][1000 genomes]
rs2902433	0.80[EUR][1000 genomes]
rs34801223	0.94[ASN][1000 genomes]
rs4073405	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4556529	0.81[JPT][hapmap];0.81[EUR][1000 genomes]
rs4755306	0.88[JPT][hapmap];0.81[MEX][hapmap];0.81[EUR][1000 genomes]
rs4755962	0.87[ASN][1000 genomes]
rs4755965	0.86[ASN][1000 genomes]
rs4755966	0.87[ASN][1000 genomes]
rs4755967	0.87[ASN][1000 genomes]
rs4992029	0.81[JPT][hapmap]
rs60816887	0.86[AFR][1000 genomes]
rs6416133	0.87[ASN][1000 genomes]
rs6485607	0.88[JPT][hapmap];0.81[EUR][1000 genomes]
rs6485608	0.88[JPT][hapmap];0.81[EUR][1000 genomes]
rs6485613	0.89[ASN][1000 genomes]
rs6485614	0.88[ASN][1000 genomes]
rs6485615	0.82[ASN][1000 genomes]
rs6485616	0.87[ASN][1000 genomes]
rs7106802	0.87[ASN][1000 genomes]
rs7110287	0.81[ASN][1000 genomes]
rs7112865	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7117240	0.82[JPT][hapmap]
rs7122933	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7123438	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7124597	0.87[ASN][1000 genomes]
rs7130748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7131174	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7131438	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7395357	0.88[JPT][hapmap];0.81[MEX][hapmap];0.81[EUR][1000 genomes]
rs7395419	0.87[JPT][hapmap];0.81[EUR][1000 genomes]
rs7395421	0.87[JPT][hapmap];0.81[EUR][1000 genomes]
rs7396488	0.88[JPT][hapmap];0.80[EUR][1000 genomes]
rs7480175	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7480542	0.87[ASN][1000 genomes]
rs7482739	0.87[CEU][hapmap]
rs7483595	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs751196	0.82[JPT][hapmap]
rs7926308	0.88[AFR][1000 genomes]
rs7943596	0.88[JPT][hapmap]
rs7946683	0.87[ASN][1000 genomes]
rs8929	0.81[JPT][hapmap]
rs9300051	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7118844	SYT13	cis	Skin Sun Exposed Lower leg	GTEx
rs7118844	SYT13	cis	cerebellum	SCAN
rs7118844	LRP4	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45320800-45323200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:45320800-45323600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:45322600-45323800	Enhancers	Duodenum Mucosa	Duodenum
4	chr11:45322600-45323800	Enhancers	Small Intestine	intestine

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