Variant report

Variant	rs11038388
Chromosome Location	chr11:45320055-45320056
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1075778	1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs10769133	0.82[EUR][1000 genomes]
rs10769134	1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs10769135	1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10769136	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1077490	1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs1077491	1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs10838437	0.93[JPT][hapmap];0.84[EUR][1000 genomes]
rs10838444	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11038360	0.87[JPT][hapmap]
rs11038382	0.82[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11038384	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11038390	0.89[ASN][1000 genomes]
rs11530155	0.88[ASN][1000 genomes]
rs11604409	0.81[EUR][1000 genomes]
rs12363398	0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12363412	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12791607	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2289448	1.00[JPT][hapmap]
rs2863176	0.87[JPT][hapmap]
rs2863178	0.93[JPT][hapmap]
rs2863181	1.00[JPT][hapmap]
rs2863182	1.00[JPT][hapmap]
rs34191816	0.85[EUR][1000 genomes]
rs34801223	0.88[ASN][1000 genomes]
rs4073405	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4556529	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs4556531	0.87[JPT][hapmap]
rs4755306	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs4755943	0.87[JPT][hapmap]
rs4992029	0.93[JPT][hapmap];0.83[EUR][1000 genomes]
rs6485603	0.87[JPT][hapmap]
rs6485607	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs6485608	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs7110580	0.87[JPT][hapmap]
rs7112865	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7114339	0.81[EUR][1000 genomes]
rs7117240	0.93[JPT][hapmap]
rs7118844	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7119605	0.80[JPT][hapmap]
rs7122933	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7123438	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7123765	0.82[EUR][1000 genomes]
rs7127746	0.87[JPT][hapmap]
rs7130748	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7131174	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7131438	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs731102	0.85[JPT][hapmap]
rs7395289	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7395357	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs7395419	1.00[JPT][hapmap]
rs7395421	1.00[JPT][hapmap]
rs7396488	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs7480175	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7483595	0.81[ASN][1000 genomes]
rs751196	0.93[JPT][hapmap]
rs7943596	1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs8929	0.86[JPT][hapmap]
rs9300051	0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv825856	chr11:45319586-45320179	Enhancers	n/a	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11038388	SYT13	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45320000-45320200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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