Variant report

Variant	rs4992029
Chromosome Location	chr11:45279678-45279679
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1075778	0.87[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs10769133	0.90[ASN][1000 genomes]
rs10769134	0.88[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs10769135	0.88[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs10769136	0.93[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs1077490	0.87[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs1077491	0.87[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs10838437	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838438	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11038354	0.85[JPT][hapmap]
rs11038358	0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs11038360	0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs11038363	0.81[ASN][1000 genomes]
rs11038372	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11038382	0.87[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs11038384	0.86[ASN][1000 genomes]
rs11038388	0.83[EUR][1000 genomes]
rs11604409	0.91[ASN][1000 genomes]
rs12363398	0.87[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs12363412	0.87[ASN][1000 genomes]
rs12791607	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2289448	0.87[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs2863176	0.94[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs2863178	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2863181	0.88[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs2863182	0.87[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs2902429	0.98[ASN][1000 genomes]
rs2902433	0.85[ASN][1000 genomes]
rs34191816	0.86[ASN][1000 genomes]
rs3758726	0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs4556529	0.86[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs4556531	0.94[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs4755306	0.81[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs4755943	0.87[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs4755945	0.86[ASN][1000 genomes]
rs6485603	0.94[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs6485605	0.96[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6485607	0.87[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs6485608	0.81[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs6485609	0.84[ASN][1000 genomes]
rs7110580	0.94[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs7114339	0.91[ASN][1000 genomes]
rs7117240	0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7119605	0.86[JPT][hapmap]
rs7123698	0.89[ASN][1000 genomes]
rs7123765	0.89[ASN][1000 genomes]
rs7127746	0.94[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs7131438	0.80[EUR][1000 genomes]
rs731102	0.84[JPT][hapmap]
rs7395289	0.86[ASN][1000 genomes]
rs7395357	0.81[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs7395419	0.85[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs7395421	0.87[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs7396488	0.82[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs751196	0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7943596	0.87[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs8929	0.94[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs9300051	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45259800-45279800	Weak transcription	Fetal Brain Male	brain
2	chr11:45264400-45280400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr11:45265400-45281200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr11:45267800-45280400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:45272800-45281200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr11:45274000-45280600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:45274400-45280000	Strong transcription	Fetal Intestine Small	intestine
8	chr11:45274400-45280000	Weak transcription	A549	lung
9	chr11:45274400-45281000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr11:45274400-45281200	Weak transcription	Pancreas	Pancrea
11	chr11:45274400-45281400	Weak transcription	Gastric	stomach
12	chr11:45274600-45280600	Weak transcription	Colonic Mucosa	Colon
13	chr11:45274600-45281000	Weak transcription	HSMM	muscle
14	chr11:45275600-45281200	Weak transcription	HSMMtube	muscle
15	chr11:45276000-45281000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr11:45276000-45281000	Weak transcription	NH-A	brain
17	chr11:45276200-45281000	Weak transcription	Duodenum Mucosa	Duodenum
18	chr11:45277200-45280800	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr11:45277600-45280600	Weak transcription	Fetal Intestine Large	intestine
20	chr11:45277800-45280200	Weak transcription	Fetal Brain Female	brain
21	chr11:45279200-45280000	Bivalent Enhancer	Brain Germinal Matrix	brain
22	chr11:45279200-45282600	Enhancers	Fetal Stomach	stomach
23	chr11:45279600-45279800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
24	chr11:45279600-45282400	Enhancers	Fetal Lung	lung

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