Variant report

Variant	rs7131438
Chromosome Location	chr11:45322401-45322402
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10742750	0.80[EUR][1000 genomes]
rs1075778	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10769133	0.81[EUR][1000 genomes]
rs10769134	0.81[EUR][1000 genomes]
rs10769135	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1077490	0.83[EUR][1000 genomes]
rs1077491	0.83[EUR][1000 genomes]
rs10838437	0.82[EUR][1000 genomes]
rs10838442	0.88[AFR][1000 genomes]
rs10838444	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11038382	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11038384	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11038388	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11038390	0.97[ASN][1000 genomes]
rs11530155	0.96[ASN][1000 genomes]
rs11604409	0.80[EUR][1000 genomes]
rs12363398	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12363412	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12791607	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34191816	0.84[EUR][1000 genomes]
rs34801223	0.96[ASN][1000 genomes]
rs4073405	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4755962	0.85[ASN][1000 genomes]
rs4755965	0.86[ASN][1000 genomes]
rs4755966	0.85[ASN][1000 genomes]
rs4755967	0.85[ASN][1000 genomes]
rs4992029	0.80[EUR][1000 genomes]
rs6416133	0.85[ASN][1000 genomes]
rs6485613	0.87[ASN][1000 genomes]
rs6485614	0.86[ASN][1000 genomes]
rs6485615	0.80[ASN][1000 genomes]
rs6485616	0.85[ASN][1000 genomes]
rs7106802	0.85[ASN][1000 genomes]
rs7110287	0.81[ASN][1000 genomes]
rs7112865	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7114339	0.80[EUR][1000 genomes]
rs7118844	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7122933	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7123438	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7123765	0.81[EUR][1000 genomes]
rs7124597	0.85[ASN][1000 genomes]
rs7130748	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7131174	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7395289	0.85[EUR][1000 genomes]
rs7480175	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7480542	0.85[ASN][1000 genomes]
rs7483595	0.89[ASN][1000 genomes]
rs7943596	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7946683	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45320800-45323200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:45320800-45323600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:45322200-45322600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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