Variant report

Variant	rs7946683
Chromosome Location	chr11:45342140-45342141
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10742748	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10742749	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1075778	0.85[JPT][hapmap]
rs10769134	0.80[CHB][hapmap];0.86[JPT][hapmap]
rs10769135	0.86[JPT][hapmap]
rs10769136	0.80[CHB][hapmap];0.85[JPT][hapmap]
rs10769138	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1077490	0.85[JPT][hapmap]
rs1077491	0.85[JPT][hapmap]
rs10838437	0.93[JPT][hapmap]
rs10838444	0.95[ASN][1000 genomes]
rs10838446	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11038360	0.86[JPT][hapmap]
rs11038382	0.86[JPT][hapmap]
rs11038390	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11530155	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12363398	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs2289448	0.86[JPT][hapmap]
rs2863176	0.85[JPT][hapmap]
rs2863178	0.93[JPT][hapmap]
rs2863181	0.80[CHB][hapmap];0.86[JPT][hapmap]
rs2863182	0.85[JPT][hapmap]
rs34801223	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4073405	0.84[ASN][1000 genomes]
rs4556529	0.92[CHB][hapmap];0.86[JPT][hapmap]
rs4556531	0.85[JPT][hapmap]
rs4755306	0.85[JPT][hapmap]
rs4755314	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4755943	0.85[JPT][hapmap]
rs4755962	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4755965	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4755966	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4755967	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4755969	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4755970	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4755975	0.82[EUR][1000 genomes]
rs4992029	0.93[JPT][hapmap]
rs6416133	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6485603	0.85[JPT][hapmap]
rs6485607	0.86[JPT][hapmap]
rs6485608	0.85[JPT][hapmap]
rs6485613	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6485614	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6485615	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6485616	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6485619	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6485620	0.86[EUR][1000 genomes]
rs7106802	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7110287	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7110580	0.85[JPT][hapmap]
rs7112192	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7112723	0.86[EUR][1000 genomes]
rs7112865	0.84[ASN][1000 genomes]
rs7117240	0.93[JPT][hapmap]
rs7118844	0.87[ASN][1000 genomes]
rs7122933	0.86[ASN][1000 genomes]
rs7123438	0.87[ASN][1000 genomes]
rs7124597	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127746	0.86[JPT][hapmap]
rs7130748	0.87[ASN][1000 genomes]
rs7131174	0.87[ASN][1000 genomes]
rs7131438	0.85[ASN][1000 genomes]
rs7395357	0.85[JPT][hapmap]
rs7395419	0.85[JPT][hapmap]
rs7395421	0.84[JPT][hapmap]
rs7396488	0.86[JPT][hapmap]
rs7478974	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7479052	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7480175	0.87[ASN][1000 genomes]
rs7480542	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7483595	0.94[ASN][1000 genomes]
rs751196	0.93[JPT][hapmap]
rs7925771	0.82[EUR][1000 genomes]
rs7943596	0.85[JPT][hapmap]
rs8929	0.85[JPT][hapmap]
rs9300051	0.93[JPT][hapmap]
rs9667484	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45326400-45344200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:45339000-45342600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:45341800-45342200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:45342000-45342400	Enhancers	Primary hematopoietic stem cells	blood

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