Variant report

Variant	rs6485619
Chromosome Location	chr11:45353567-45353568
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:45132082..45133595-chr11:45353521..45354803,7	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10742748	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10742749	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10742750	0.82[ASN][1000 genomes]
rs10769138	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10838446	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4755314	0.82[EUR][1000 genomes]
rs4755962	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4755965	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4755966	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4755967	0.91[EUR][1000 genomes]
rs4755969	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4755970	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4755975	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6416133	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6485613	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6485614	0.94[EUR][1000 genomes]
rs6485615	0.87[EUR][1000 genomes]
rs6485616	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6485620	0.87[CHB][hapmap];0.86[JPT][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7106802	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7110287	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7112192	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7112723	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7124597	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7478974	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7479052	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7480542	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7482739	0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs7925771	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7946683	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9667484	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45353400-45354200	Enhancers	Osteobl	bone
2	chr11:45353400-45357800	Enhancers	Fetal Muscle Leg	muscle

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